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MOD Curator Conference Call Schedule
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Date and link to meeting notesCommunication venues (#slack channels and document links)TopicPresentersMinute taker
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5/4/2016#zfin, #wormbaseSeries Overview and MOD site overviewDoug Howe (ZFIN), Karen Yook (WormBase)Chris Grove (WB)Gray = Past Meetings.
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5/11/2016#flybase, #rgdMOD site overview continuedChris Tabone (FB), Stan (RGD)Doug Howe (ZFIN)Green = Upcoming Meetings.
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5/18/2016#mgi, #sgdMOD site overview continuedDavid Shaw (MGI), Edith Wong (SGD)Karen Yook (WB)
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5/25/2016#we_need_a_new_namePI summary of NHGRI meeting/Review of curator call detailsPaul S. and the PIs, Karen YookChris Grove (WB)
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6/1/2016#phenotypesPhenotype methods (PATO/non-PATO etc) and annotated objects (gene, genotype, feature, etc)Rob Nash, Yvonne Bradford, Chris Grove, Gillian Millburn, Jennifer Smith, Sue Bello, Chris MungallRichard Baldarelli (MGI)
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6/8/2016#phenotypesPhenotype Search/Browse/ResultsCeri Van Slyke (ZFIN), Raymond Lee (WB), Chris Mungall (GO), Sue Bello (MGI), Aoife Larkin (FB)Edith Wong (SGD)
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6/15/16#human_disease_models, #phenotypes, #pathwaysDeriving gene-to-disease and gene-to-phenotype annotations
(see comments for this topic by clicking on it in the topic signup table below, currently row #47)
Sue Bello (MGI)
Doug Howe (ZFIN)
Leyla Ruzicka (ZFIN)
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6/22/16OrthologySteven Marygold (FB), Mary Dolan (MGI),
Edith Wong (SGD), Ken Frazer (ZFIN),
Stan (RGD), Michael Paulini (WB)
Chris Tabone (FB)
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6/29/16#phenotypesPhenotype Curation InterfaceCeri Van Slyke (ZFIN), Chris Grove (WB)
Jennifer Smith (RGD), (MGI - none), (FlyBase - none), (SGD - none)
Sue Bello (MGI)
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7/6/16NomenclatureMary Ann Tuli(WB), Sue Bello(MGI, alleles), Amy Singer (ZFIN), Gillian Millburn (FB)Moni Munoz-Torres (GO)
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7/13/16 - 7/17GSA - TAGC meeting------
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7/20/16#curation_toolsCuration Status and TrackingCeri Van Slyke (ZFIN),Gillian Millburn (FB), Chris Grove (WB)Jennifer Smith (RGD)
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7/27/16#phenotypes #curation_toolsPhenotype curation interface Round 2Chris Mungall (GO),
Sue Bello (MGI)
SGD
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8/10/16#curation_toolsCuration Status and Tracking Round 2Edith (SGD)Karen Yook (WB)
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8/17/16#curation_toolsNLP to aid curationStan (RGD), Kimberly (WB)ZFIN
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8/24/16#curation_toolsNLP to aid curationRocky/Monica (MGI)Chris Tabone (FB)
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8/31/16#visualizationGenome BrowsingJennifer (RGD), Gil (FB), Sridhar (ZFIN)MGI
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9/14/16#visualizationGenome BrowsingEdith (SGD), Paul Hale (MGI), Scott Cain (WB)Moni Munoz-Torres (GO)
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9/21/16-skip
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9/28/16#curation_toolsAllele AnnotationSue (MGI), Amy (ZFIN), Maryann (WB)RGD
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10/12/16#phenotypes
#curation_tools
Expression as Phenotype AnnotationsLeyla R. (ZFIN), Chris G (WB)SGD
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10/19/16Human disease - data types annotated to human diseases (phenotypic model, genetic model, biomarker, etc)Sue (MGI)Kimberly Van Auken (WB)
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10/26/16Curation Styles - paper by paper, topic by topic, gene by gene, whole paper per curator, one topic per curator, etc.Sue (MGI), Daniela (WB), Amy (ZFIN)ZFIN
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11/2/16-skip
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11/9/16-skip
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11/16/16Curation Styles - paper by paper, topic by topic, gene by gene, whole paper per curator, one topic per curator, etc.Rob (SGD)
Gillian (FB)
FB
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11/23/16-skip
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11/30/16#small_moleculesSmall Molecules - includes - metabolites as well as toxins, drugs, etc. used to assay gene expression, phenotypes, etc.
Description of all ways that small molecules are included in curation and what ontologies are used.
Karen (WB), Sabrina (ZFIN)Kimberly Van Auken (GO)
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12/7/16#visualizationJBrowse / Apollo integration, Genome / Sequence Annotation. | What entities does each group represent and how are they generated?Moni (GO, BBOP)
Sridhar (ZFIN)
Gary (WB)
MGI
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12/14/16#phenotypesHow to allow both EQ style and precomposed style phenotypesSue (MGI)
Chris G. (WB)
Chris M. (GO)
RGD
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12/21/16-skip
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12/28/16-skip
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1/4/17-skip - first Wed
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1/11/17Community AnnotationChris G. (WB)
Val Wood (PomBase)
SGD
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1/18/17Gene interactions - pathway possibilities
Topic skipped, no presenters.
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1/25/17Gene interactions - pathway possibilitiesChris G. (WB)Ranjana Kishore (WB)
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2/1/17-skip- first Wed
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2/8/17Gene Expression - low throughput- Curation interface, annotated entities and Web displayDaniela Raciti (WB)
Connie Smith (MGI/GXD)
ZFIN
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2/15/17Mine features and MOD features - what features are unique to mines, which are unique to MODs, where is there overlap?
Topic skipped - no presenters
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2/22/17#modminesIntegration of phenotype data skippedChris Mungall (GO)
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3/1/17-skip- first Wed
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3/8/17BgeeFrédéric BastianFB
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3/22/17Synteny BrowsersMichael Paulini, Paul HaleGO
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4/12/17Community support - "Colleague" information, person records, lab records, etc. ; Community Outreach, social mediaCecilia Nakamura (WB) - for person curation.
Chris Grove - mentioning live chat for help (WB)
Moni Munoz-Torres (GO) - brief comments on outreach and update on community support.
Doug Howe (ZFIN) - Person/Lab/Company, Twitter, community input
MGI
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