Award Abstract # 1813069
US-Israel Collab: Are parasites in complex communities more evolvable? Bridging ecology and evolution with computational modeling and rodent-bacteria evolution experiments

NSF Org: DEB
Division Of Environmental Biology
Recipient: REGENTS OF THE UNIVERSITY OF MICHIGAN
Initial Amendment Date: June 6, 2018
Latest Amendment Date: July 1, 2022
Award Number: 1813069
Award Instrument: Standard Grant
Program Manager: Katharina Dittmar
kdittmar@nsf.gov
 (703)292-7799
DEB
 Division Of Environmental Biology
BIO
 Direct For Biological Sciences
Start Date: September 1, 2018
End Date: August 31, 2024 (Estimated)
Total Intended Award Amount: $1,594,591.00
Total Awarded Amount to Date: $1,640,665.00
Funds Obligated to Date: FY 2018 = $1,594,591.00
FY 2022 = $46,074.00
History of Investigator:
  • Luis Zaman (Principal Investigator)
    zamanlh@umich.edu
  • Richard Lenski (Co-Principal Investigator)
  • Jeffrey Barrick (Co-Principal Investigator)
Recipient Sponsored Research Office: Regents of the University of Michigan - Ann Arbor
1109 GEDDES AVE, SUITE 3300
ANN ARBOR
MI  US  48109-1079
(734)763-6438
Sponsor Congressional District: 06
Primary Place of Performance: University of Michigan Ann Arbor
500 Church St., 727 Weiser
Ann Arbor
MI  US  48109-1107
Primary Place of Performance
Congressional District:
06
Unique Entity Identifier (UEI): GNJ7BBP73WE9
Parent UEI:
NSF Program(s): Ecology of Infectious Diseases
Primary Program Source: 01002223DB NSF RESEARCH & RELATED ACTIVIT
01001819DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1228, 7242, 9251, CL10
Program Element Code(s): 724200
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

There is a growing appreciation that evolution plays a central role in the emergence and reemergence of infectious diseases. However, our understanding of why some pathogens and parasites rapidly adapt to novel environments, while others don't, remains incomplete. This ability of some parasites to evolve rapidly (i.e., evolvability) allows them to "jump" into infecting new host species. This project will examine whether and how some natural communities of interacting animals and microbes generate conditions that favor the evolution of evolvability. Understanding why variation in evolvability arises can help to identify potential emerging diseases and inform management strategies that reduce their ability to spread. It makes intuitive sense that greater evolvability is beneficial for the parasite, but evolvability does not directly increase the parasite's reproduction or survivorship. Thus, it is less clear how it arises or is maintained in populations. Results from computer simulations suggest that evolvability is advantageous in unpredictable and constantly changing environments. The project uses computer simulations of host-parasite coevolution as well as field and laboratory experiments using a natural bacteria-rodent system to identify specific aspects of parasite ecology that promote or hinder the evolution of evolvability. This project is a collaboration with Israeli scientists. It will develop new computational tools for the scientific community, materials for undergraduate and secondary school classrooms, as well as teacher training and research experience for teachers in Michigan.

Parasite populations typically evolve in complex communities, where multiple host species have overlapping ranges, and multiple infections occur within a single host. This project will address four central aims: 1) quantifying the effect of host heterogeneity on parasite evolvability and diversity; 2) measuring how host heterogeneity influences the prevalence and intensity of coinfection by multiple parasite species; 3) identifying the effect of parasite coinfection on evolvability and diversity; and 4) quantifying the combined effects of host heterogeneity and parasite coinfection on evolvability and diversity. Experiments using Avida, a computational platform where digital hosts and parasites evolve in an open-ended fashion, will be complemented by a combination of field-site sampling and laboratory evolution experiments using Bartonella parasites and their wild rodent hosts in the Israeli Negev Dunes.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 11)
Izutsu, Minako and Lenski, Richard E. "Experimental test of the contributions of initial variation and new mutations to adaptive evolution in a novel environment" Frontiers in Ecology and Evolution , v.10 , 2022 https://doi.org/10.3389/fevo.2022.958406 Citation Details
Gómez-Garzón, Camilo and Barrick, Jeffrey E. and Payne, Shelley M. "Disentangling the Evolutionary History of Feo, the Major Ferrous Iron Transport System in Bacteria" mBio , v.13 , 2022 https://doi.org/10.1128/mbio.03512-21 Citation Details
Vostinar, Anya E. and Skocelas, Katherine G. and Lalejini, Alexander and Zaman, Luis "Symbiosis in Digital Evolution: Past, Present, and Future" Frontiers in Ecology and Evolution , v.9 , 2021 https://doi.org/10.3389/fevo.2021.739047 Citation Details
Rodríguez?Pastor, Ruth and Shafran, Yarden and Knossow, Nadav and Gutiérrez, Ricardo and Harrus, Shimon and Zaman, Luis and Lenski, Richard E. and Barrick, Jeffrey E. and Hawlena, Hadas "A road map for in vivo evolution experiments with blood?borne parasitic microbes" Molecular Ecology Resources , 2022 https://doi.org/10.1111/1755-0998.13649 Citation Details
Lalejini, Alexander and Dolson, Emily and Vostinar, Anya E. and Zaman, Luis "Selection schemes from evolutionary computing show promise for directed evolution of microbes" GECCO '22: Proceedings of the Genetic and Evolutionary Computation Conference Companion , 2022 https://doi.org/10.1145/3520304.3528900 Citation Details
Kumawat, Bhaskar and Zaman, Luis "Architecture of the Genotype-Phenotype Map and the Coevolution of Complexity" Proceedings of the ALIFE 2022: The 2022 Conference on Artificial Life , 2021 https://doi.org/10.1162/isal_a_00386 Citation Details
Maritan, Elisa and Gallo, Marialaura and Srutkova, Dagmar and Jelinkova, Anna and Benada, Oldrich and Kofronova, Olga and Silva-Soares, Nuno F. and Hudcovic, Tomas and Gifford, Isaac and Barrick, Jeffrey E. and Schwarzer, Martin and Martino, Maria Elena "Gut microbe Lactiplantibacillus plantarum undergoes different evolutionary trajectories between insects and mammals" BMC Biology , v.20 , 2022 https://doi.org/10.1186/s12915-022-01477-y Citation Details
Acosta, Monica M. and Zaman, Luis "Ecological Opportunity and Necessity: Biotic and Abiotic Drivers Interact During Diversification of Digital Host-Parasite Communities" Frontiers in Ecology and Evolution , v.9 , 2022 https://doi.org/10.3389/fevo.2021.750772 Citation Details
Rodríguez-Pastor, Ruth and Hasik, Adam Z. and Knossow, Nadav and Bar-Shira, Enav and Shahar, Naama and Gutiérrez, Ricardo and Zaman, Luis and Harrus, Shimon and Lenski, Richard E. and Barrick, Jeffrey E. and Hawlena, Hadas "Bartonella infections are prevalent in rodents despite efficient immune responses" Parasites & Vectors , v.16 , 2023 https://doi.org/10.1186/s13071-023-05918-7 Citation Details
Deatherage, Daniel E. and Barrick, Jeffrey E. "High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencing" Cell Systems , v.12 , 2021 https://doi.org/10.1016/j.cels.2021.08.011 Citation Details
Lalejini, Alexander and Dolson, Emily and Vostinar, Anya E and Zaman, Luis "Artificial selection methods from evolutionary computing show promise for directed evolution of microbes" eLife , v.11 , 2022 https://doi.org/10.7554/eLife.79665 Citation Details
(Showing: 1 - 10 of 11)

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