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add one more example, GTF from ensembl
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Chris Fields
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Aug 27, 2010
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,81 @@ | ||
| 12 protein_coding exon 57792754 57792766 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "1"; gene_name "Pax9"; transcript_name "Pax9-001"; | ||
| 12 protein_coding exon 57796458 57796851 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-001"; | ||
| 12 protein_coding CDS 57796848 57796851 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-001"; protein_id "ENSMUSP00000117928"; | ||
| 12 protein_coding start_codon 57796848 57796850 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-001"; | ||
| 12 protein_coding exon 57797561 57798187 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "3"; gene_name "Pax9"; transcript_name "Pax9-001"; | ||
| 12 protein_coding CDS 57797561 57798187 . + 2 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "3"; gene_name "Pax9"; transcript_name "Pax9-001"; protein_id "ENSMUSP00000117928"; | ||
| 12 protein_coding exon 57800999 57801141 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-001"; | ||
| 12 protein_coding CDS 57800999 57801141 . + 2 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-001"; protein_id "ENSMUSP00000117928"; | ||
| 12 protein_coding exon 57810640 57813809 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "5"; gene_name "Pax9"; transcript_name "Pax9-001"; | ||
| 12 protein_coding CDS 57810640 57810891 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "5"; gene_name "Pax9"; transcript_name "Pax9-001"; protein_id "ENSMUSP00000117928"; | ||
| 12 protein_coding stop_codon 57810892 57810894 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000153250"; exon_number "5"; gene_name "Pax9"; transcript_name "Pax9-001"; | ||
| 12 protein_coding exon 57796626 57796851 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "1"; gene_name "Pax9"; transcript_name "Pax9-201"; | ||
| 12 protein_coding CDS 57796782 57796851 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "1"; gene_name "Pax9"; transcript_name "Pax9-201"; protein_id "ENSMUSP00000001538"; | ||
| 12 protein_coding exon 57797561 57798187 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-201"; | ||
| 12 protein_coding CDS 57797561 57798187 . + 2 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-201"; protein_id "ENSMUSP00000001538"; | ||
| 12 protein_coding exon 57800999 57801141 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "3"; gene_name "Pax9"; transcript_name "Pax9-201"; | ||
| 12 protein_coding CDS 57800999 57801141 . + 2 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "3"; gene_name "Pax9"; transcript_name "Pax9-201"; protein_id "ENSMUSP00000001538"; | ||
| 12 protein_coding exon 57810640 57812217 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-201"; | ||
| 12 protein_coding CDS 57810640 57810891 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-201"; protein_id "ENSMUSP00000001538"; | ||
| 12 protein_coding stop_codon 57810892 57810894 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000001538"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-201"; | ||
| 12 protein_coding exon 57796686 57796851 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "1"; gene_name "Pax9"; transcript_name "Pax9-202"; | ||
| 12 protein_coding CDS 57796848 57796851 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "1"; gene_name "Pax9"; transcript_name "Pax9-202"; protein_id "ENSMUSP00000112131"; | ||
| 12 protein_coding start_codon 57796848 57796850 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "1"; gene_name "Pax9"; transcript_name "Pax9-202"; | ||
| 12 protein_coding exon 57797561 57798187 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-202"; | ||
| 12 protein_coding CDS 57797561 57798187 . + 2 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-202"; protein_id "ENSMUSP00000112131"; | ||
| 12 protein_coding exon 57800999 57801141 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "3"; gene_name "Pax9"; transcript_name "Pax9-202"; | ||
| 12 protein_coding CDS 57800999 57801141 . + 2 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "3"; gene_name "Pax9"; transcript_name "Pax9-202"; protein_id "ENSMUSP00000112131"; | ||
| 12 protein_coding exon 57810640 57811319 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-202"; | ||
| 12 protein_coding CDS 57810640 57810891 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-202"; protein_id "ENSMUSP00000112131"; | ||
| 12 protein_coding stop_codon 57810892 57810894 . + 0 gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000116430"; exon_number "4"; gene_name "Pax9"; transcript_name "Pax9-202"; | ||
| 12 protein_coding exon 57796716 57798187 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000152848"; exon_number "1"; gene_name "Pax9"; transcript_name "Pax9-002"; | ||
| 12 protein_coding exon 57800999 57801141 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000152848"; exon_number "2"; gene_name "Pax9"; transcript_name "Pax9-002"; | ||
| 12 protein_coding exon 57810640 57811333 . + . gene_id "ENSMUSG00000001497"; transcript_id "ENSMUST00000152848"; exon_number "3"; gene_name "Pax9"; transcript_name "Pax9-002"; | ||
| 12 protein_coding exon 58297860 58298459 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "1"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 58297860 58297926 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "1"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding start_codon 58297924 58297926 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "1"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding exon 58029252 58029300 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "2"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 58029252 58029300 . - 2 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "2"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57959014 57959097 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "3"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57959014 57959097 . - 1 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "3"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57876313 57876379 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "4"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57876313 57876379 . - 1 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "4"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57871140 57871199 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "5"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57871140 57871199 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "5"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57867005 57867112 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "6"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57867005 57867112 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "6"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57839457 57839621 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "7"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57839457 57839621 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "7"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57819127 57819308 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "8"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57819127 57819308 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "8"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57818225 57818277 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "9"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57818225 57818277 . - 1 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "9"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding exon 57813621 57814861 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "10"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding CDS 57814803 57814861 . - 2 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "10"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; protein_id "ENSMUSP00000039289"; | ||
| 12 protein_coding stop_codon 57814800 57814802 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000044634"; exon_number "10"; gene_name "Slc25a21"; transcript_name "Slc25a21-001"; | ||
| 12 protein_coding exon 57876804 57876814 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "1"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57876804 57876814 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "1"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding exon 57876313 57876379 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "2"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57876313 57876379 . - 1 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "2"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding exon 57871140 57871199 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "3"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57871140 57871199 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "3"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding exon 57867005 57867112 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "4"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57867005 57867112 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "4"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding exon 57839457 57839621 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "5"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57839457 57839621 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "5"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding exon 57819127 57819308 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "6"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57819127 57819308 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "6"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding exon 57818225 57818277 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "7"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57818225 57818277 . - 1 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "7"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding exon 57813811 57814861 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "8"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding CDS 57814803 57814861 . - 2 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "8"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; protein_id "ENSMUSP00000106308"; | ||
| 12 protein_coding stop_codon 57814800 57814802 . - 0 gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000110680"; exon_number "8"; gene_name "Slc25a21"; transcript_name "Slc25a21-201"; | ||
| 12 protein_coding exon 57876313 57876347 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160709"; exon_number "1"; gene_name "Slc25a21"; transcript_name "Slc25a21-002"; | ||
| 12 protein_coding exon 57871140 57871199 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160709"; exon_number "2"; gene_name "Slc25a21"; transcript_name "Slc25a21-002"; | ||
| 12 protein_coding exon 57867005 57867112 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160709"; exon_number "3"; gene_name "Slc25a21"; transcript_name "Slc25a21-002"; | ||
| 12 protein_coding exon 57839457 57839621 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160709"; exon_number "4"; gene_name "Slc25a21"; transcript_name "Slc25a21-002"; | ||
| 12 protein_coding exon 57828114 57828303 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160709"; exon_number "5"; gene_name "Slc25a21"; transcript_name "Slc25a21-002"; | ||
| 12 protein_coding exon 58081279 58081380 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160892"; exon_number "1"; gene_name "Slc25a21"; transcript_name "Slc25a21-003"; | ||
| 12 protein_coding exon 58029252 58029300 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160892"; exon_number "2"; gene_name "Slc25a21"; transcript_name "Slc25a21-003"; | ||
| 12 protein_coding exon 57959014 57959097 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160892"; exon_number "3"; gene_name "Slc25a21"; transcript_name "Slc25a21-003"; | ||
| 12 protein_coding exon 57874499 57876379 . - . gene_id "ENSMUSG00000035472"; transcript_id "ENSMUST00000160892"; exon_number "4"; gene_name "Slc25a21"; transcript_name "Slc25a21-003"; |