Crystalline A-dna: the X-ray analysis of the fragment d(G-G-T-A-T-A-C-C)

Proc R Soc Lond B Biol Sci. 1981 Nov 24;213(1193):479-87. doi: 10.1098/rspb.1981.0076.

Abstract

An A-DNA type double helical conformation was observed in the single crystal X-ray structure of the octamer d(G-G-T-A-T-A-C-C), 1, and its 5-bromouracil-containing analogue, 2. The structure of the isomorphous crystals (space group P61) was solved by a search technique based on packing criteria and R-factor calculations, with use of only low order data. At the present stage of refinement the R factors are 31% for 1 and 28% for 2 at a resolution of 2.25 A (0.225 nm). The molecules interact through their minor grooves by hydrogen bonding and base to sugar van der Waals contacts. The stable A conformation observed in the crystal may have some structural relevance to promoter regions where the T-A-T-A sequence is frequently found.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • Crystallography
  • DNA*
  • Hydrogen Bonding
  • Nucleic Acid Conformation
  • Oligodeoxyribonucleotides* / chemical synthesis
  • Oligonucleotides* / chemical synthesis

Substances

  • Oligodeoxyribonucleotides
  • Oligonucleotides
  • DNA