Application for Participation in the "Data management and graph extraction for large models in the biomedical space" Hackathon at Carnegie Mellon Libraries October 19-21

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Email *

Tell us (in 2 - 3 sentences) about your interest in Bioinformatics or Biomedical Informatics

What is your name? *

What is your GitHub username? *

What institution/company are you at? *

Have you previously been in any hackathon or codeathon?

Yes

Clear selection

Do you have a working knowledge of shell scripting? *

Yes

What other programming languages do you use? *

Python

Java

C/C++

JavaScript

Perl

Django

Other:

Required

Please tell us in 2-3 sentences what you work on.

Please tell us in 2-3 sentences why you want to participate.

Here are some approximate projects that groups will work on in this codeathon. Which are you potentially interested in working on? *

Knowledge graph based validation for variant (genomic) assertions

Continuous monitoring for RLHF; Flexible infrastructure for layering assertions with rollback

Flexible tokenization or graph-based loading of complex data types

Assertion tracking in large models

Column headers for data harmonization

Time-resolved vector positioning in large models

Cohort based vcfs to knowledge graphs

Virus-associated changes in disease trajectories

Metagenomic features associated with health and disease

Other:

Required

Are you available to attend the hackathon in person (we strongly encourage folks from north america to participate in person if possible) *

Yes

In person -- Silicon Valley

Other:

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